Archive For May 8, 2014

bioperl for sequences

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There are a lot of ways of dealing with sequence data, but I still like the venerable bioperl. It’s just a pain to remember the syntax all the time. So here’s a quick reminder for how to deal with Fasta sequences. Your fasta file can have just one sequence or more than one sequence, separated…

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Useful bioconductor methods

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I always forget these sort of commands

A useful overview of all the “parts” of Bioconductor. http://bioconductor.org/help/course-materials/2013/GenentechMay2013/Genentech2013.pdf

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