Archive For The “bioperl” Category

local lib for perl

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Using shared environments has it benefits, but dealing with perl install paths isn’t one of them. You can install perl to a local directory, but i’ve since found the local::lib module to be a great means of isolating a perl install similar to python’s virtual environment. The basics: download the locallib source, unpack and change…

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bioperl for sequences

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There are a lot of ways of dealing with sequence data, but I still like the venerable bioperl. It’s just a pain to remember the syntax all the time. So here’s a quick reminder for how to deal with Fasta sequences. Your fasta file can have just one sequence or more than one sequence, separated…

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